rs2073525 chr6:33323048 A>G
- Sequence
acaggcttcctgtggccggaggtg[A/G]cagtaggcccgccccgcgaacacc
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma) pancreas Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN CREB1_HUMAN GABPA_HUMAN FOXA3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.20 | 1.40 | 1.27 | 2.23 | Concordant | |||
| CREB1_HUMAN | 1.31 | -0.02 | 1.64 | n/a | No Hit | |||
| GABPA_HUMAN | 1.78 | 1.38 | 1.96 | 0.32 | Weak Discordant | |||
| FOXA3_HUMAN | 1.90 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP diastolic blood pressure (dbp), ldl cholesterol, rheumatoid arthritis, systolic blood pressure (sbp), total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood