rs2077440 chr13:23889479 C>G
- Sequence
ggcctcaggacgtgggcacgttgt[C/G]gtccagagagcaagagcgtcgctc
- ASB in cell types
- foreskin keratinocyte SKH1 (chronic myelogenous leukemia, BCR-ABL1 positive) CD14+ monocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- RUNX1_HUMAN RUNX3_HUMAN STAT1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RUNX1_HUMAN | -1.69 | 1.85 | 1.33 | n/a | No Hit | |||
| RUNX3_HUMAN | -2.98 | 2.39 | 1.50 | 4.77 | Concordant | |||
| STAT1_HUMAN | 1.25 | 1.27 | 2.11 | n/a | No Hit | |||
| CTCF_HUMAN | 0.73 | 0.48 | 1.55 | n/a | No Hit | |||
| CREB1_HUMAN | 0.68 | 0.41 | 1.53 | n/a | No Hit |
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Motif analysis
