rs208794 chr20:38894236 G>A
- Sequence
ctggcgctgagccctggcttccct[G/A]gggataggggtggggctgtggtgc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NFIC_HUMAN MNT_HUMAN EGR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | 2.44 | n/a | 2.00 | n/a | No Hit | |||
| MNT_HUMAN | 1.61 | -0.54 | 2.00 | n/a | n/a | |||
| EGR1_HUMAN | 1.64 | 0.28 | 1.83 | -0.79 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Nerve_Tibial, Stomach, Testis