rs212846 chr7:26681994 C>T
- Sequence
attacctgcaccactcattctgag[C/T]cactagatggcgtaaaaaaaaaca
- ASB in cell types
- A549 (lung carcinoma) foreskin keratinocyte neural cell VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.02 | 0.64 | 1.66 | -3.34 | Concordant | |||
| SMC3_HUMAN | 1.21 | 0.20 | 1.89 | n/a | n/a | |||
| RAD21_HUMAN | 0.68 | 0.75 | 1.77 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Brain_Hippocampus, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood