ADASTRA v1.6.10
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rs212853
chr7:26686701
A
>
G
Sequence
aaacattctagtcagattaaatca[A/G]ttggtaaatgggtcaaatgttgtg
ASB in cell types
A549 (lung carcinoma)
HEK293 (embryonic kidney)
foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN
RAD21_HUMAN
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Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
0.91
0.37
8.7·10
-4
1.00
1.75
n/a
No Hit
RAD21_HUMAN
0.63
-0.08
0.02
0.98
1.93
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol
,
homa-b
,
irritible bowel syndrome
GTEx eQTL
Adipose_Visceral_Omentum
,
Brain_Cerebellum
,
Brain_Hippocampus
,
Lung
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Spleen
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)