rs2141512 chr7:148262838 T>C
- Sequence
acaaaattgcagaatggtctcgtg[T/C]cacatggtcaggtcctggagagcc
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) MM1.S (plasma cell myeloma) H1 (embryonic stem cells)
- ASB for transcription factors
- BHE40_HUMAN USF1_HUMAN MITF_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | -2.41 | 2.32 | 1.33 | 2.45 | Concordant | |||
| USF1_HUMAN | 1.84 | -0.73 | 1.78 | -4.43 | Concordant | |||
| MITF_HUMAN | 2.01 | -2.54 | 1.50 | -3.32 | Concordant | |||
| RAD21_HUMAN | 0.37 | 0.79 | 1.45 | n/a | n/a |
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Motif analysis
