rs2145852 chr10:99788859 C>T
- Sequence
tggaaggtttccagatgtgttccc[C/T]aggcattcctggtggtaggaagag
- ASB in cell types
- A549 (lung carcinoma) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- JUN_HUMAN GCR_HUMAN JUNB_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.49 | 1.34 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | -0.65 | 1.61 | 2.04 | n/a | No Hit | |||
| JUNB_HUMAN | -0.91 | 1.54 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.46 | -0.74 | 1.50 | n/a | No Hit | |||
| BCL3_HUMAN | -0.38 | 1.04 | 1.90 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood