rs2147037 chr1:16613670 C>G
- Sequence
gcggcctcttctgcacaacgggtt[C/G]gagcaggttaggggccgcgcaggc
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- MAX_HUMAN CTCF_HUMAN SNAI2_HUMAN ZN524_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | 1.54 | 0.58 | 1.64 | n/a | No Hit | |||
| CTCF_HUMAN | 1.01 | 0.89 | 1.64 | n/a | No Hit | |||
| SNAI2_HUMAN | 1.53 | -0.44 | 1.50 | n/a | No Hit | |||
| ZN524_HUMAN | 2.88 | n/a | 2.00 | n/a | n/a | |||
| CREB1_HUMAN | 1.30 | -0.14 | 1.72 | n/a | No Hit |
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Motif analysis
