rs216152 chr16:15821963 A>G
- Sequence
gacagatacctgactccaggagcc[A/G]tcactttacaacctgagattacag
- ASB in cell types
- A549 (lung carcinoma) HEK293 (embryonic kidney) MCF10A (breast epithelial cells) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.36 | 0.46 | 1.64 | 0.30 | Weak Discordant | |||
| RAD21_HUMAN | 0.72 | -0.07 | 1.75 | n/a | n/a | |||
| SMC3_HUMAN | 1.07 | -0.07 | 1.84 | n/a | n/a |
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Motif analysis
