rs2169480 - ADASTRA v1.6.10

Sequence: cgtgttcgtcaatttccttcctgc[A/G]taaccggaagtctctctctcctgg
ASB in cell types: K562 (myelogenous leukemia) VCaP (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) A549 (lung carcinoma)
ASB for transcription factors: GABPA_HUMAN FOXA1_HUMAN ELF1_HUMAN NR2C1_HUMAN
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Transcription factors

Cell types

Uniprot ID	Effect size Ref	Effect size Alt	FDR Ref	FDR Alt	Mean BAD	Motif fold change	Motif concordance
GABPA_HUMAN	0.49	1.89	1.00	6.0·10^-6	1.90	1.44	Weak Concordant
FOXA1_HUMAN	0.60	2.34	1.00	5.0·10^-3	1.67	n/a	No Hit
ELF1_HUMAN	1.31	-0.26	6.4·10^-3	0.83	1.90	0.70	Weak Discordant
NR2C1_HUMAN	2.06	-2.40	0.01	1.00	2.00	n/a	No Hit
JUN_HUMAN	0.19	0.70	0.94	0.02	1.24	n/a	No Hit

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GABPA_HUMAN

Weak Concordant

ELF1_HUMAN

Weak Discordant

GRASP prop taste detection threshold, total cholesterol

GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Muscle_Skeletal, Testis, Thyroid, Whole_Blood