rs2176550 chr2:181077310 A>G
- Sequence
gtgtgatatcctttcacacaccat[A/G]aatctccactagatgtcagtgtgt
- ASB in cell types
- A549 (lung carcinoma) K562 (myelogenous leukemia) adrenal gland
- ASB for transcription factors
- PKNX1_HUMAN SMC3_HUMAN MEIS2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | 2.15 | -0.79 | 1.50 | n/a | No Hit | |||
| SMC3_HUMAN | 0.93 | -0.17 | 1.87 | n/a | n/a | |||
| MEIS2_HUMAN | 2.07 | -1.76 | 1.33 | n/a | No Hit | |||
| RAD21_HUMAN | 1.18 | 0.93 | 1.99 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood