rs2209174 chr1:16645453 C>G
- Sequence
gctgtgctaggcccttgcaactga[C/G]ctgtgggacctgaggcctggcccc
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293 (embryonic kidney) liver GM12878 (female B-cells)
- ASB for transcription factors
- CREB1_HUMAN GABPA_HUMAN HNF4A_HUMAN MAX_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 2.29 | -2.03 | 1.67 | n/a | No Hit | |||
| GABPA_HUMAN | 1.85 | -2.18 | 1.33 | n/a | No Hit | |||
| HNF4A_HUMAN | 1.89 | -1.15 | 1.33 | n/a | No Hit | |||
| MAX_HUMAN | 2.07 | -0.51 | 1.38 | n/a | No Hit | |||
| THA11_HUMAN | 2.02 | -2.28 | 1.33 | n/a | No Hit |
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Motif analysis
