rs2211089 chr10:101142340 G>A
- Sequence
acccaaaagctggaggccgcggcc[G/A]tgattcagcagccacccagaagtg
- ASB in cell types
- A549 (lung carcinoma) T47D (invasive ductal carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.27 | 0.61 | 1.63 | n/a | No Hit | |||
| RAD21_HUMAN | 1.48 | 1.07 | 1.96 | n/a | n/a | |||
| SMC3_HUMAN | 1.04 | 0.45 | 1.95 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, triglycerides change with statins