rs2224812 chr1:16645371 G>T
- Sequence
cccaaccccagggcacctcaagtg[G/T]ccccaccaaaccttcctaacacct
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) GM12878 (female B-cells) HEK293T (embryonic kidney)
- ASB for transcription factors
- CEBPB_HUMAN NR2C1_HUMAN CAVN1_HUMAN NR4A1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | -1.61 | 1.39 | 1.33 | n/a | No Hit | |||
| NR2C1_HUMAN | -1.32 | 1.41 | 2.28 | n/a | No Hit | |||
| CAVN1_HUMAN | -2.05 | 2.11 | 1.33 | n/a | n/a | |||
| NR4A1_HUMAN | -1.83 | 1.64 | 1.33 | n/a | No Hit | |||
| ZN398_HUMAN | 2.14 | -1.97 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 13