rs223044 chr11:32092015 T>G
- Sequence
gccctgtaaatctatcgtaaggag[T/G]ctgggcgcggtgactcacgcctgt
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- GATA1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | -0.06 | 2.74 | 1.83 | n/a | No Hit | |||
| JUN_HUMAN | 1.00 | 0.24 | 1.88 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood