rs2232573 chr20:38345891 T>C
- Sequence
ctggcacactgactcaattatgta[T/C]ttaagggcaagtccctgaaattga
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA2_HUMAN TEAD3_HUMAN TBX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | -1.86 | 1.68 | 1.33 | 1.89 | Weak Concordant | |||
| TEAD3_HUMAN | -1.81 | 1.98 | 1.33 | n/a | n/a | |||
| TBX3_HUMAN | -1.72 | 1.86 | 1.00 | n/a | No Hit |
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Motif analysis
