ADASTRA v1.6.10
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rs2233613
chr5:141511203
G
>
A
Sequence
aggccaggccaagagccacagggc[G/A]gcctctccccaaccagcccagctt
ASB in cell types
GM12878 (female B-cells)
ASB for transcription factors
IKZF1_HUMAN
IKZF2_HUMAN
MEF2B_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN
2.30
-1.53
1.9·10
-5
1.00
1.33
n/a
No Hit
IKZF2_HUMAN
2.54
-2.89
6.8·10
-5
1.00
1.33
n/a
n/a
MEF2B_HUMAN
2.28
-2.08
1.2·10
-3
1.00
1.33
n/a
No Hit
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
comorbid depressive syndrome and alcohol dependence
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Tibial
,
Breast_Mammary_Tissue
,
Esophagus_Gastroesophageal_Junction
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Lung
,
Muscle_Skeletal
,
Pancreas
,
Spleen
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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log2-scale
log2(Alt/Ref motif p-value)