rs2235092 chr17:56834568 G>A
- Sequence
tggacgcgctcccgaggtggggcg[G/A]gttggggagtggggattggagcgt
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- ZBT26_HUMAN RING2_HUMAN KDM1A_HUMAN NFIC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | 0.75 | n/a | 6.00 | n/a | n/a | |||
| RING2_HUMAN | n/a | 2.43 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | -0.13 | 1.82 | 2.00 | n/a | n/a | |||
| NFIC_HUMAN | n/a | 2.35 | 2.00 | n/a | No Hit | |||
| SP2_HUMAN | 1.79 | n/a | 2.00 | -5.28 | Concordant |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_EBV-transformed_lymphocytes, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Testis