rs2236054 chr1:11980267 A>G
- Sequence
cgcgcggaggagtggcgcgctgag[A/G]cgccgctcgaagcgccgagtcgcg
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- P66B_HUMAN HTF4_HUMAN NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| P66B_HUMAN | -3.61 | 2.97 | 1.33 | n/a | n/a | |||
| HTF4_HUMAN | n/a | 1.96 | 1.33 | n/a | No Hit | |||
| NRF1_HUMAN | n/a | 1.43 | 1.33 | 3.69 | Concordant |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood