rs2236249 chr20:17570782 C>T
- Sequence
gcaggatcctggcatgatttagaa[C/T]ggggtggccttgcagctcctttgt
- ASB in cell types
- T47D (invasive ductal carcinoma) PC3 (prostate carcinoma)
- ASB for transcription factors
- PRGR_HUMAN ANDR_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRGR_HUMAN | 2.12 | 0.29 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.66 | -0.02 | 1.75 | n/a | No Hit | |||
| ESR1_HUMAN | 1.75 | -0.90 | 2.00 | -2.87 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood