rs2240722 chr4:10019133 A>G
- Sequence
gggcgcgcagccagggccgaggga[A/G]gacctggaacgttccctcagctgg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) LNCaP C4-2B (prostate carcinoma) Kasumi-1 (acute myeloblastic leukemia)
- ASB for transcription factors
- ELF1_HUMAN ZFX_HUMAN HDAC1_HUMAN ATF7_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | 1.87 | 1.63 | 1.61 | n/a | No Hit | |||
| ZFX_HUMAN | n/a | 2.32 | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.87 | 1.83 | 2.00 | n/a | n/a | |||
| ATF7_HUMAN | -1.99 | 2.22 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | -0.86 | 1.91 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid