rs2241010 chr17:38869886 C>T
- Sequence
gtcagcctgagagcgctgaggcgc[C/T]agcaccgcgggccccgccgtcccc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- JUN_HUMAN NRF1_HUMAN VEZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.36 | -0.82 | 3.00 | n/a | No Hit | |||
| NRF1_HUMAN | -0.15 | 1.79 | 2.00 | -1.15 | Weak Discordant | |||
| VEZF1_HUMAN | -3.11 | 2.35 | 2.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Esophagus_Mucosa, Lung, Testis, Thyroid, Whole_Blood