rs224183 chr16:3184217 C>T
- Sequence
gaccaacgagccgccgcttcccct[C/T]tgttttgttgttgttgttgttgtt
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- SOX6_HUMAN FOXK2_HUMAN CTBP1_HUMAN TBP_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SOX6_HUMAN | n/a | 3.64 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 0.23 | 2.35 | 1.78 | n/a | n/a | |||
| CTBP1_HUMAN | -2.59 | 1.99 | 1.75 | n/a | n/a | |||
| TBP_HUMAN | -0.40 | 2.11 | 1.67 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.13 | 1.57 | 1.67 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Frontal_Cortex_BA9, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood