rs224184 chr16:3184445 A>T
- Sequence
gctggtggtttcaatgtcgtcctg[A/T]tatgaaatataagtgcatttgcct
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- SOX6_HUMAN E2F1_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SOX6_HUMAN | -3.75 | 2.52 | 2.00 | n/a | n/a | |||
| E2F1_HUMAN | n/a | 2.45 | 2.00 | n/a | No Hit | |||
| HDAC1_HUMAN | -0.58 | 1.69 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Frontal_Cortex_BA9, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood