rs224186 chr16:3153063 C>T
- Sequence
ggtgcggagtttccgaagggttac[C/T]aaaaaggctctaaatcagaaacct
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZSC29_HUMAN ZEB2_HUMAN ATF3_HUMAN NFIC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZSC29_HUMAN | 0.81 | n/a | 2.00 | n/a | n/a | |||
| ZEB2_HUMAN | 2.46 | n/a | 2.00 | n/a | n/a | |||
| ATF3_HUMAN | 1.81 | -1.38 | 2.00 | n/a | No Hit | |||
| NFIC_HUMAN | 2.24 | n/a | 2.00 | n/a | No Hit | |||
| HDAC2_HUMAN | 1.82 | -0.94 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood