rs2246249 chr1:16624288 T>A
- Sequence
aggccttactgcaggtgtgtggcc[T/A]cctctgacacggtcctgccttcac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) NCI-H2171 (small cell lung carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ESR1_HUMAN ANDR_HUMAN MYC_HUMAN MAX_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.87 | -0.44 | 2.90 | n/a | No Hit | |||
| ANDR_HUMAN | 1.97 | -1.11 | 1.88 | n/a | No Hit | |||
| MYC_HUMAN | 2.48 | -0.87 | 2.11 | n/a | No Hit | |||
| MAX_HUMAN | 2.35 | -3.00 | 1.92 | n/a | No Hit | |||
| AP2C_HUMAN | 1.44 | -0.76 | 2.50 | n/a | No Hit |
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