rs2248933 chr10:43420579 G>T
- Sequence
cccttccagcgctgccggcggcgg[G/T]gcgggtgccgggcgcgcctgctgc
- ASB in cell types
- HCT-116 (colon carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- ZFX_HUMAN MEF2B_HUMAN USF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 2.03 | -1.59 | 1.17 | n/a | No Hit | |||
| MEF2B_HUMAN | n/a | 1.66 | 1.33 | n/a | No Hit | |||
| USF2_HUMAN | -1.74 | 1.88 | 1.50 | -3.66 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid