rs2249706 chr9:127563044 G>T
- Sequence
aggacggcgggtgagtggttccta[G/T]tcctgtttttccgcttcactcctt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) CD14+ monocytes adrenal gland
- ASB for transcription factors
- STAT1_HUMAN CTCF_HUMAN GRHL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -3.80 | 2.78 | 2.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.17 | 0.85 | 1.28 | n/a | No Hit | |||
| GRHL2_HUMAN | 0.98 | 0.15 | 1.48 | -0.27 | Weak Concordant |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pituitary, Prostate, Thyroid, Whole_Blood