rs225115 chr1:7954388 C>T
- Sequence
ggtggcccacgctgggggggggct[C/T]ttcacactggtgggcgcagaggcg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CREB1_HUMAN MNT_HUMAN HDAC1_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.29 | 0.07 | 1.64 | n/a | No Hit | |||
| MNT_HUMAN | 0.69 | 1.43 | 1.47 | n/a | n/a | |||
| HDAC1_HUMAN | -0.04 | 1.79 | 1.33 | n/a | n/a | |||
| FOXK2_HUMAN | 1.63 | 0.47 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood