rs225430 chr21:42381603 C>A
- Sequence
ctggcctcaagaagctctttctgc[C/A]tccaggtggcaccaacagggagaa
- ASB in cell types
- transverse colon upper lobe of left lung Peyer's patch GM23338
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.26 | -0.41 | 1.48 | -7.26 | Concordant | |||
| RAD21_HUMAN | 1.67 | -1.55 | 1.39 | n/a | n/a | |||
| REST_HUMAN | 1.70 | -1.95 | 1.33 | n/a | No Hit |
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Motif analysis
