rs2254488 chr20:38751560 G>A
- Sequence
gctggtgaggtatgatacagcagt[G/A]acattttagttccctacagtaagt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) CD34+ hematopoietic stem cells GM12878 (female B-cells)
- ASB for transcription factors
- RAD21_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.54 | 1.44 | 1.38 | n/a | n/a | |||
| FOXK2_HUMAN | 1.59 | n/a | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood