rs2266959 chr22:21568615 G>T
- Sequence
cgctaattggcaccttttggtgag[G/T]aacacatgctaaattggcttagta
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | -0.77 | 1.29 | 5.83 | |||
| HEK293 (embryonic kidney) | 0.02 | 0.68 | 2.00 |
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Motif analysis
No data available
Genetic associations
EMBL-EBI crohns disease, inflammatory bowel disease, juvenile idiopathic arthritis (oligoarticular or rheumatoid factor-negative polyarticular), ulcerative colitis
GRASP adiponectin levels, aortic valve calcium, hdl cholesterol, height, inflammatory bowel disease, juvenile idiopathic arthritis (including oligoarticular and rheumatoid factor-negative polyarticular jia), oligoarticular juvenile idiopathic arthritis, rheumatoid arthritis, rheumatoid factor-negative polyarticular juvenile idiopathic arthritis, total cholesterol, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood