rs2268676 chr5:37371287 G>A
- Sequence
attagggtaggttatttagggaag[G/A]gagggagggaaaggaagggaagga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) HepG2 (hepatoblastoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- LCORL_HUMAN ZN444_HUMAN CREB1_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LCORL_HUMAN | n/a | 2.94 | 1.33 | n/a | n/a | |||
| ZN444_HUMAN | n/a | 3.16 | 2.50 | n/a | n/a | |||
| CREB1_HUMAN | -0.43 | 1.92 | 1.93 | n/a | No Hit | |||
| GABPA_HUMAN | -0.29 | 1.22 | 1.93 | n/a | No Hit | |||
| EGR1_HUMAN | -0.11 | 1.04 | 1.33 | 2.37 | Concordant |
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Motif analysis
