rs2269839 chr7:25249989 G>T
- Sequence
caaacaactgatgttagcaatgag[G/T]actttgctatttacatagagcttt
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP C4-2 (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.87 | 2.30 | 1.60 | 5.53 | Concordant | |||
| FOXA1_HUMAN | -1.90 | 2.68 | 1.52 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
