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rs2276856 chr3:45995913 C>T

Sequence
tcccggggctccgactacaactcc[C/T]ggcgactccgcagggcggggttta
ASB in cell types
HepG2 (hepatoblastoma) GM12878 (female B-cells)
ASB for transcription factors
KLF10_HUMAN FOXK2_HUMAN GABPA_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KLF10_HUMAN 2.38 -2.42 2.9·10-41.00 1.33 n/a n/a
FOXK2_HUMAN 2.14 -1.87 1.6·10-31.00 1.33 n/a n/a
GABPA_HUMAN 1.27 -0.90 0.021.00 1.33 -3.78 Concordant
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Motif analysis

GABPA_HUMAN Concordant
GABPA_HUMAN pic

Genetic associations

GRASP homa-b
GTEx eQTL Adipose_Subcutaneous Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Esophagus_Mucosa Stomach Whole_Blood

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