rs227727 chr17:56699594 A>T
- Sequence
cctgggaccgaggacaggagggat[A/T]aagggagctcttctctgacactcc
- ASB in cell types
- A549 (lung carcinoma) SK-N-SH (neuroblastoma) MCF7 (Invasive ductal breast carcinoma) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- OTX2_HUMAN ANDR_HUMAN JUN_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| OTX2_HUMAN | n/a | 1.91 | 1.33 | 6.14 | Concordant | |||
| ANDR_HUMAN | -3.03 | 2.20 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.11 | 1.02 | 2.50 | n/a | No Hit |
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Motif analysis
