rs2277617 chr17:44899705 T>G
- Sequence
cgggcagatcacgtggtcaggctg[T/G]tagcgcagttgctaggcaaccaca
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor tissue
- ASB for transcription factors
- FOXK2_HUMAN ESR1_HUMAN MNT_HUMAN KAISO_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 1.85 | -0.51 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.63 | n/a | 2.50 | n/a | No Hit | |||
| MNT_HUMAN | 1.51 | n/a | 2.00 | n/a | n/a | |||
| KAISO_HUMAN | 1.92 | -1.77 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Mucosa, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood