rs2278228 chr5:176361917 T>C
- Sequence
catgcccttcgccgcccagcgagt[T/C]gtggagccgcagctccgagtgtgg
- ASB in cell types
- K562 (myelogenous leukemia) liver GM12878 (female B-cells) periferal blood macrophages
- ASB for transcription factors
- RFOX2_HUMAN KAISO_HUMAN MNT_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | 2.35 | -3.49 | 2.00 | n/a | n/a | |||
| KAISO_HUMAN | 1.41 | -0.58 | 1.83 | n/a | No Hit | |||
| MNT_HUMAN | 1.74 | -0.11 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood