rs2278229 chr5:176361895 T>C
- Sequence
atcgcgagacccgccccctcccca[T/C]gcccttcgccgcccagcgagttgt
- ASB in cell types
- GM12878 (female B-cells) liver CD14+ monocytes MDA231-LM2-4175 (breast adenocarcinoma)
- ASB for transcription factors
- IRF5_HUMAN FOXK2_HUMAN STAT1_HUMAN E2F1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IRF5_HUMAN | n/a | 2.35 | 1.33 | n/a | n/a | |||
| FOXK2_HUMAN | -2.35 | 2.40 | 1.33 | n/a | n/a | |||
| STAT1_HUMAN | -3.46 | 2.47 | 2.50 | n/a | No Hit | |||
| E2F1_HUMAN | 2.18 | n/a | 2.00 | 3.96 | Discordant | |||
| KAISO_HUMAN | 1.25 | -0.39 | 1.56 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood