rs2278308 chr10:62018847 G>T
- Sequence
tgtgacaaagatctgcttttatca[G/T]gacagctgccagattcataccaca
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma) CWR22 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.55 | -0.44 | 1.60 | n/a | No Hit | |||
| ANDR_HUMAN | 1.17 | -0.23 | 1.57 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, eye color, hdl cholesterol, hdl cholesterol change with statins, rheumatoid arthritis, total cholesterol