rs2278682 chr2:135985573 G>C
- Sequence
cccagtctccgccctcccgaccct[G/C]gggtctcagcacacgcgctcggac
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells)
- ASB for transcription factors
- FOXK2_HUMAN NR2F6_HUMAN CREB1_HUMAN BC11B_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.23 | -0.56 | 1.75 | n/a | n/a | |||
| NR2F6_HUMAN | 1.93 | -2.68 | 2.00 | n/a | n/a | |||
| CREB1_HUMAN | 1.48 | -0.15 | 1.92 | n/a | No Hit | |||
| BC11B_HUMAN | 1.34 | -3.54 | 2.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, advanced age-related macular degeneration, aortic valve calcium, cystatin c in serum, hdl cholesterol, ldl cholesterol, refractive error, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood