rs2279199 chr3:124730405 T>C
- Sequence
gcggaagaggcgggacttcgcggg[T/C]gacgtcatcggggcgccggaggcc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) A549 (lung carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ATF2_HUMAN FOXK2_HUMAN JUN_HUMAN CLOCK_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | 1.70 | n/a | 1.50 | -7.82 | Concordant | |||
| FOXK2_HUMAN | 2.55 | 0.28 | 1.56 | n/a | n/a | |||
| JUN_HUMAN | 1.07 | -0.14 | 2.10 | n/a | No Hit | |||
| CLOCK_HUMAN | -3.04 | 2.19 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood