rs2279339 chr10:58385238 C>A
- Sequence
ccggggacagaggtggctcaacag[C/A]gccgcctcgaagccagagccctcc
- ASB in cell types
- spleen Peyer's patch adrenal gland upper lobe of left lung
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN AP2A_HUMAN KDM5B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.58 | -1.76 | 1.29 | -3.29 | Concordant | |||
| RAD21_HUMAN | 2.19 | -1.13 | 1.33 | n/a | n/a | |||
| AP2A_HUMAN | 2.14 | -3.03 | 2.00 | n/a | No Hit | |||
| KDM5B_HUMAN | 1.71 | -0.05 | 1.44 | n/a | n/a | |||
| TBX21_HUMAN | 1.54 | -0.68 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid