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rs2279940 chr10:119933265 A>G

Sequence
gagattcttttactgatacaatgt[A/G]ctatgaatattcatttgaattact
ASB in cell types
foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.77 0.10 8.0·10-51.00 1.64 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy) ldl cholesterol parkinsons disease
GTEx eQTL Cells_Cultured_fibroblasts Muscle_Skeletal Nerve_Tibial Skin_Sun_Exposed_Lower_leg Testis Whole_Blood

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