rs2280344 chr19:18204473 G>C
- Sequence
acccaccccaggtaggggactctt[G/C]aggccaccgtctagtccaaggtgc
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor tissue
- ASB for transcription factors
- ZN407_HUMAN ESR1_HUMAN ZEB2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN407_HUMAN | n/a | 2.72 | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | n/a | 1.96 | 2.33 | n/a | No Hit | |||
| ZEB2_HUMAN | -1.52 | 1.75 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Stomach, Testis