rs228061 chr21:42537675 G>A
- Sequence
ggagccaaagtatcaatagtgctg[G/A]ggttcagaaagcctgctttaagta
- ASB in cell types
- GM12878 (female B-cells) VCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -1.05 | 1.82 | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.29 | 0.71 | 1.46 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood