rs2282172 chr3:119463684 T>C
- Sequence
cggtctgccccagccgcgagtgcg[T/C]ccccggaatcagccggcacgacaa
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) CD14+ monocytes breast tumor tissue
- ASB for transcription factors
- CTCF_HUMAN PATZ1_HUMAN STAT1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.24 | 1.46 | 1.23 | n/a | No Hit | |||
| PATZ1_HUMAN | -2.57 | 2.39 | 1.33 | n/a | No Hit | |||
| STAT1_HUMAN | 1.87 | n/a | 2.50 | n/a | No Hit | |||
| ESR1_HUMAN | 1.41 | n/a | 2.50 | n/a | No Hit | |||
| ZN189_HUMAN | 2.07 | -1.76 | 1.33 | n/a | n/a |
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