rs228273 chr17:38751870 C>T
- Sequence
cacagagaccgagtcgactaccgg[C/T]gtagtagtgagccgagtcaatggg
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma)
- ASB for transcription factors
- MNT_HUMAN SOX6_HUMAN GABP1_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | -0.68 | 1.79 | 2.00 | n/a | n/a | |||
| SOX6_HUMAN | n/a | 2.54 | 2.00 | n/a | n/a | |||
| GABP1_HUMAN | -1.17 | 1.98 | 2.00 | n/a | n/a | |||
| CREB1_HUMAN | 0.36 | 1.10 | 1.70 | n/a | No Hit | |||
| ZNF24_HUMAN | -0.41 | 1.11 | 1.90 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood