rs2283053 chr7:116786965 A>G
- Sequence
gagttgcaaagaaattgtgacttc[A/G]actgaaagctgagtttcagttcct
- ASB in cell types
- GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma) monocyte-derived dendritic cells periferal blood macrophages
- ASB for transcription factors
- SPI1_HUMAN COT1_HUMAN ATF7_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.52 | -0.07 | 1.73 | n/a | No Hit | |||
| COT1_HUMAN | 1.35 | -1.62 | 1.33 | n/a | No Hit | |||
| ATF7_HUMAN | 2.03 | -1.84 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.67 | 0.45 | 1.56 | n/a | No Hit | |||
| TRI22_HUMAN | 1.43 | -0.01 | 1.28 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GRASP autism, childhood acute lymphoblastic leukemia, cystatin c in serum, diastolic blood pressure (dbp), homa-b, major depressive disorder, neuroticism, triglycerides
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial