rs228539 chr1:79199040 G>A
- Sequence
cctaaggctttctcaattaatatt[G/A]tgagtcatcttgcctagttcagag
- ASB in cell types
- coronary artery smooth muscle MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOS_HUMAN JUN_HUMAN JUND_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | n/a | 2.51 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 0.44 | 2.07 | 1.67 | 1.78 | Weak Concordant | |||
| JUND_HUMAN | -1.46 | 1.26 | 1.33 | 0.11 | Weak Concordant |
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Motif analysis
